What I came to realize in doing this background work is that while surely there will be chaos in the near term -- some proud programs like Missouri and Kansas, for instance, are effectively homeless for the time being -- it isn't necessarily the case that we won't end up with a reasonably elegant solution in the long-run.
Inevitably, it seems, we are headed toward four 16-team superconferences, each one representing one of the four major regions of the country. But when you start to sort everything out, it doesn't look so bad, leaving plenty of rivalries intact and very few BCS teams without a home. Here's an example of one such scenario:

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